منابع مشابه
Sequence-dependent folding landscapes of adenine riboswitch aptamers.
Expression of a large fraction of genes in bacteria is controlled by riboswitches, which are found in the untranslated region of mRNA. Structurally riboswitches have a conserved aptamer domain to which a metabolite binds, resulting in a conformational change in the downstream expression platform. Prediction of the functions of riboswitches requires a quantitative description of the folding land...
متن کاملRelative stability of helices determines the folding landscape of adenine riboswitch aptamers.
Riboswitches, whose folding is controlled by binding of metabolites to the aptamer domain, regulate downstream gene expression. Folding properties of the aptamer strongly influence the conformation of the downstream expression platform, which controls transcription termination or translation initiation. We have characterized the energy landscape of the add riboswitch aptamer quantitatively by u...
متن کاملSingle-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism
Riboswitches regulate gene expression via ligand binding to an aptamer domain which induces conformational changes in a regulatory expression platform. By unfolding and refolding single add adenine riboswitch molecules in an optical trap, an integrated picture of the folding was developed and related to the regulatory mechanism. Force-extension curves (FECs) and constant-force folding trajector...
متن کاملMetal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain
Divalent cations are important in the folding and stabilization of complex RNA structures. The adenine-sensing riboswitch controls the expression of mRNAs for proteins involved in purine metabolism by directly sensing intracellular adenine levels. Adenine binds with high affinity and specificity to the ligand binding or aptamer domain of the adenine-sensing riboswitch. The X-ray structure of th...
متن کاملFolding of a transcriptionally acting preQ1 riboswitch.
7-Aminomethyl-7-deazaguanine (preQ(1)) sensitive mRNA domains belong to the smallest riboswitches known to date. Although recent efforts have revealed the three-dimensional architecture of the ligand-aptamer complex less is known about the molecular details of the ligand-induced response mechanism that modulates gene expression. We present an in vitro investigation on the ligand-induced folding...
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ژورنال
عنوان ژورنال: Chemistry & Biology
سال: 2006
ISSN: 1074-5521
DOI: 10.1016/j.chembiol.2006.06.010